Introduction: Why Reconciliation in QuickBooks is Essential
One of the most important bookkeeping tasks is reconciliation. If you’re wondering how to reconcile in QuickBooks, you’re already taking the right step toward financial accuracy. Reconciliation involves comparing your QuickBooks transactions to your bank or credit card statements to confirm they match.
Whether you use QuickBooks Online or QuickBooks Desktop, learning how to reconcile in QuickBooks ensures your books are error-free, tax-ready, and fraud-proof. Follow this guide for a step-by-step walkthrough, common error highlights, and expert tips to simplify reconciliation.
Table of Contents
What is Reconciliation in QuickBooks?
Reconciliation means confirming that the transactions in QuickBooks match your real-world bank or credit card records. By knowing how to reconcile in QuickBooks, you can:
- Detect missing deposits or expenses.
- Identify duplicate entries.
- Catch fraudulent transactions.
- Ensure your reports are accurate.
The goal of reconciliation is simple: your QuickBooks balance should match your bank statement balance.
Benefits of Reconciling in QuickBooks
Before diving into the how to reconcile in QuickBooks process, let’s look at the benefits:
- Accurate Reports – Financial reports are more reliable when accounts are reconciled.
- Fraud Detection – Unusual or unauthorized transactions are easier to spot.
- Tax Compliance – Reconciling makes tax filing smooth.
- Cash Flow Control – You always know your real cash position.
- Error Correction – Mistakes like double entries can be fixed quickly.
How to Reconcile in QuickBooks Online – Step-by-Step
If you’re using QuickBooks Online (QBO), follow these steps to understand how to reconcile in QuickBooks Online:
Step 1: Prepare Your Statement
Get your bank or credit card statement with beginning and ending balances for the month.
Step 2: Access Reconciliation Tool

- Log in to QuickBooks Online.
- Go to Settings ⚙ > Reconcile.
- Select the account you want to reconcile.
Step 3: Enter Statement Information

- Enter Ending Balance and Ending Date as shown on the bank statement.
Step 4: Match Transactions
- Check each transaction in QuickBooks Online against your bank statement.
- Mark them as “cleared” once matched.
Step 5: Clear the Difference
- The goal is a $0.00 difference.
- If everything matches, click Finish Now.
How to Reconcile in QuickBooks Desktop – Step-by-Step
If you’re using QuickBooks Desktop (QBD), the process is slightly different. Here’s how to reconcile in QuickBooks Desktop:
Step 1: Open Reconciliation Window
- From the menu, select Banking > Reconcile.
Step 2: Enter Statement Details

- Select your account.
- Enter the statement date and ending balance.
Step 3: Review Transactions
- Compare QuickBooks transactions with your bank statement.
- Check off all matching items.
Step 4: Zero Out the Difference
- The difference should be zero.
- If not, review for missing deposits, duplicate entries, or wrong amounts.
Step 5: Finalize the Reconciliation
- Once balanced, click Reconcile Now.
QuickBooks Online vs Desktop Reconciliation
When discussing how to reconcile in QuickBooks, it’s important to understand the differences between Online and Desktop versions.
| Feature | QuickBooks Online | QuickBooks Desktop |
| Access | Cloud-based | Installed on PC |
| Automation | Bank feeds update automatically | Often requires manual uploads |
| Interface | Simplified & modern | Detailed & traditional |
| Undo Option | Available (Accountant Edition) | Manual adjustments required |
| Reports | Easy PDF download | More customization options |
Common Issues When Reconciling in QuickBooks
Even when you know how to reconcile in QuickBooks, errors can occur. Here are some common issues:
- Balances Don’t Match – Usually due to missing or extra entries.
- Duplicate Transactions – Often caused by manual entry and bank feed overlap.
- Uncleared Checks – Checks still pending at the bank create mismatches.
- Previous Reconciliation Changed – If past entries were deleted or edited.
- Currency Differences – Conversion errors for foreign transactions.
Troubleshooting Reconciliation Problems in QuickBooks
If you face challenges, here’s how to reconcile in QuickBooks by fixing issues:
- Undo Reconciliation: To reverse a reconciliation in QuickBooks Online Accountant, use the undo feature. In Desktop, manually undo transactions by selecting the “undo last reconciliation’ option.
- Run Reports: Use the Reconciliation Discrepancy Report to find changes.
- Adjust Opening Balance: Ensure the opening balance matches the statement.
- Check Deleted Entries: Look for missing invoices, checks, or deposits.
Best Practices for QuickBooks Reconciliation
To make reconciliation smooth, follow these best practices:
- Reconcile Monthly – Never skip a month.
- Use Bank Feeds – Reduces manual entry errors.
- Lock Past Periods – Prevents accidental changes.
- Save Reports – Always keep reconciliation reports for records.
- Backup Data – Especially important in QuickBooks Desktop.
When to Seek Professional Help
Even after learning how to reconcile in QuickBooks, some businesses still face complex issues such as large discrepancies, duplicate transactions, or corrupted files. In such cases, hiring a QuickBooks expert or accountant is the best choice.
Professionals can:
- Undo and redo reconciliations.
- Repair corrupted company files.
- Clean up large sets of data.
- Ensure compliance with accounting standards.
Final Thoughts
Now you know exactly how to reconcile in QuickBooks for both Online and Desktop versions. Regular reconciliation enables you to maintain accurate financial records, identify errors promptly, and ensure compliance with business standards.
If you struggle with reconciliation, don’t worry—professional QuickBooks experts are always available to help.
Frequently Asked Questions (FAQs)
What is reconciliation in QuickBooks?
Reconciliation in QuickBooks is the process of matching your QuickBooks transactions with your bank or credit card statement to ensure accuracy.
How often should I reconcile in QuickBooks?
You should reconcile your accounts in QuickBooks every month, as soon as you receive your bank or credit card statements.
Can I undo a reconciliation in QuickBooks?
Yes, in QuickBooks Online Accountant you can undo an entire reconciliation. In QuickBooks Desktop, you need to manually unreconcile each transaction.
Why is reconciliation important in QuickBooks?
Reconciliation is important because it ensures your books are accurate, helps detect fraud, prevents errors, and keeps your tax records compliant.
What if my QuickBooks reconciliation doesn’t balance?
If reconciliation doesn’t balance, check for duplicate transactions, missing entries, uncleared checks, or previous reconciliations that were changed. You may need to undo and redo reconciliation.
Need help reconciling your accounts? At Databrax, we specialize in QuickBooks support, cleanup, and reconciliation services. Contact us today to simplify your accounting process.